PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N02187.1.p
Common NameLOC105950230, MIMGU_mgv1a008853mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family WRKY
Protein Properties Length: 361aa    MW: 40685.6 Da    PI: 10.2139
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N02187.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.61.9e-31294352360
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                       D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYegeHnh+k
  Migut.N02187.1.p 294 DEYSWRKYGQKPIKGSPHPRGYYKCSSLrGCPARKHVERCLEEPSMLIVTYEGEHNHPK 352
                       9*************************998****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.9E-17245290IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.0E-33280352IPR003657WRKY domain
PROSITE profilePS5081129.815287353IPR003657WRKY domain
SuperFamilySSF1182904.58E-27290352IPR003657WRKY domain
SMARTSM007741.3E-38292352IPR003657WRKY domain
PfamPF031065.0E-27294351IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MEEIEKANIS AVESCHRVIN ILSKHHQDQN QTRNLAEQTG DAVHKFKKVV SLLTSSSPNC  60
GHARVRKSKK FQTPFPQNIF LENPIFTTTT ENNNHHHHHH QQNPLHHLLQ ISQENAPPPT  120
TANTGKNPSL ELSSHGKNLQ LAIQTPLPNS HFLHHHHHQQ HHQQQQQRFQ LQQQQLKQQA  180
ELMYRRSNSG ISLNFDSSTC TPTMSSTRSF ISSLSMDGTV ANLDGSSFRL IGAARSADQS  240
SYHNKRRCNG RGEDGSVKCG GSARCHCSKK RKHRVKRSIK VPAISNKLAD IPPDEYSWRK  300
YGQKPIKGSP HPRGYYKCSS LRGCPARKHV ERCLEEPSML IVTYEGEHNH PKLPSESANT  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-202883551076WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012829030.10.0PREDICTED: probable WRKY transcription factor 21
SwissprotO043361e-115WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A022PUH10.0A0A022PUH1_ERYGU; Uncharacterized protein
STRINGPGSC0003DMT4000389861e-159(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32712350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.18e-98WRKY DNA-binding protein 21